Run a workflow step — run.workflowstep • PEITHO

This function executes a single workflow step, updating the workflow state with the result or error from the step execution.

Usage

# S3 method for class 'workflowstep'
run(x, state, env = NULL, step_i = NULL, input_list = NULL, ...)

x: A `workflowstep` object representing the step to execute.
state: A `workflowstate` object representing the current state of the workflow.
env: An environment to look up the command function. Defaults to the step's own env or the caller's env.
step_i: The number of the step in the workflow, used for logging purposes.
input_list: A list of inputs for argument parsing, loaded from the workflow's inputs file.
...: Additional arguments (not used).

A `workflowsteprun` object recording the execution of the step.