Package index • PEITHO

All functions

add_step(): Add a step to a workflow
add_step(<workflow>): Add a new step to the workflow
as.commands_record(): Convert an object to commands.json record format
as.commands_record(<workflow>): Convert a workflow object to commands.json record format
as.commands_record(<workflowstep>): Convert a workflowstep to commands.json record format
as.data.frame(<workflow>): Convert a workflow object to a data frame
as.data.frame(<workflowrun>): Convert a workflowrun object to a data frame
as.data.frame(<workflowstate>): Convert a workflowstate to a data frame
as.data.frame(<workflowstep>): Convert a workflowstep to a data frame
config(): Load PEITHO configuration
fetch_WebText(): Fetch and parse web text from a URL
get_field(): Get a specific field
get_field(<workflow>): Get a specific field from a workflow
get_field(<workflowstep>): Get a specific field from a workflowstep
import_workflow(): Import workflow from a ZIP file
inputs_table_server(): Inputs Table Server
inputs_table_ui(): Inputs Table UI
new_WebText(): WebText Class Represents text content fetched from a web page.
new_operationparam(): Create a new operation parameter object
new_workflow(): Create a new workflow object
new_workflowrun(): Workflow run object
new_workflowstate(): Create a new workflow state object
new_workflowstep(): Create a new workflow step object
new_workflowsteprun(): Create a new workflow step run object
`%||%`: Null coalescing operator Returns left value if not NULL, otherwise right value.
print(<operationparam>): Print method for operationparam objects
print(<workflow>): Print method for workflow objects
print(<workflowrun>): Print method for workflowrun objects
print(<workflowstate>): Print method for workflowstate objects
print(<workflowstep>): Print method for workflowstep objects
print(<workflowsteprun>): Print method for workflowsteprun objects
remove_step(): Remove a step from a workflow
remove_step(<workflow>): Remove a step from the workflow
results_table_server(): Results Table Server Module
results_table_ui(): Results Table UI Module
run(): Run a workflow step
run(<workflow>): Run the entire workflow
run(<workflowstep>): Run a workflow step
save_as_zip(): Save an object as a ZIP file
save_as_zip(<workflow>): Save workflow as a ZIP file
startApplication(): Start Application
summary(<workflowsteprun>): Summary method for workflowsteprun objects
update(): Update an object
update(<workflow>): Update a workflow step with a new value
update(<workflowstate>): Add a workflow step run to the workflow state
update(<workflowstep>): Update a workflow step
update_input_list(): Update the input list of a workflow
update_input_list(<workflow>): Update the input list of a workflow
workflow_file_paths(): Helper to get file paths for PEITHO workflow files
workflow_steps_from_files(): Extract workflow steps from files in a folder
workflow_table_server(): Workflow Table Server
workflow_table_ui(): Workflow Table UI