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OsteoBioR 24.10.0

Updates

  • Credibility intervals over time updates (availbale with shinyTools 24.10.0) (#51):
    • option to format and set ranges of a second y-axis analog to other axes
    • option to use transformations for the x or y axis in order to handle extreme values
    • update example for mathematical annotation in titles

Bug Fixes

  • removing duplicated warnings when plotting models with no samples (#55)

OsteoBioR 24.09.3

Updates

  • break point detection (#49, #61)
    • new outputs in tab ‘2. MCP Modeling’: plot, waic
    • new methods for model comparison in tab ‘3. Comparison of Models’: waic, heuristic
  • Credibility intervals over time: new option to use notation for sub- and superscripts in titles of a plots, axis or the legend (#59)

Bug Fixes

  • fix missing filter for legend content in Credibility intervals over time (#63)

OsteoBioR 24.09.1

Fixes

  • Clean up of rstan files and src folder. Add command to generate cpp files to Dockerfile.

OsteoBioR 24.08.2

New Features

  • option to run a break point detection based on the mcp package (#49, #61)

Updates

  • Credibility intervals over time (#59):
    • secondary axis: set the range if “Range detected from data” is unchecked and a second axis is selected
    • option to choose a custom legend position

Bug Fixes

  • Credibility intervals over time in secondary axis: fix that removes the axis if the model was removed from the input and the plot was recreated (#59)

OsteoBioR 24.08.1

Bug Fixes

  • catch error when trying to display plot and table of models that failed and have no samples (#55)

OsteoBioR 24.08.0

Bug Fixes

  • prevent dropUp of inputs for Element and Time variables in the tab Model and other ‘pickerInputs’ (#56)

OsteoBioR 24.04.1

New Features

  • when generating multiple plots in Credible intervals over time have the option to select which ones to show/hide (#45)
  • when having two y-axes (one on the left and another one on the right of the plot). Have the option to switch their positions. (#43)
  • option to add/edit plot(s) legend
  • table output of data for the “Credible intervals over time” plot (#43)
  • option to export values for displayed graph under “Credibility intervals over time” (#43)
  • option to export data for single plots or batch export (#43)
    • for the latter a single file is generated with data for different individuals separated by a fully empty row.
    • individual ID’s are given in a first column and for all x values
    • a column gives row number (1,2,3…) for each estimate

OsteoBioR 24.04.0

New Features

  • option to change symbol, color, size of points in “Model: Credibility intervals over time” (#43)

OsteoBioR 24.01.1

New Features

  • option to use rownames of data as individual variable. This allows to use non-numeric values for individuals since rownames do not need to be numeric (#35)

OsteoBioR 24.01.0

Bug Fixes

  • fix a bug that prevented the usage of multiple cores during model estimation. In essence only a single core was used.

OsteoBioR 23.12.2

New Features

  • Import of models from Pandora:
    • display of “About” information that is associated to a selected Pandora Repository

Bug Fixes

  • Import of models from Pandora:
    • an error message occurred when trying to load a model from pandora.
    • fix: adding the missing download of the zip file from the url before unpacking the zip

OsteoBioR 23.12.0

New Features

  • option to use a fixed seed when fitting the model (#37)

OsteoBioR 23.10.1

Bug Fixes

  • fix for model down- and upload: add missing export to package functions

OsteoBioR 23.10.0

New Features

  • Import of models:
    • option to import models from Pandora platform

OsteoBioR 23.09.1

New Features

  • tab Model, section Credibility intervals over time: new checkbox to extend the x-axis labels to the lower and upper x limit (#26)

OsteoBioR 23.04.1

Bug Fixes

  • add missing logic for default values if “Use renewal rates uncertainty” is unchecked (#24)
  • add an error message if the number of rows or columns do not match between renewal rates and their uncertainties
  • add tests to check new logic

OsteoBioR 23.03.2

Updates

  • remote models are loaded from the github folder inst/app/predefinedModels of the respective repository
  • if there is no internet connection remote models are taken from the models that were saved with the last deployed app version

OsteoBioR 23.03.1

Bug fixes

  • add remote package to enable the Import Data module

OsteoBioR 23.02.2

Updates

  • add more tryCatch statements

OsteoBioR 23.02.1

New Features

  • the Import Data module is now imported from the new package DataTools (#15, PR #16)
    • additionally to file import, now import from URL or from Pandora Platform is possible
    • all redundant code was removed
    • using “file” as default source in Import Data
  • now, sidebars are fixed with auto scroll in all tabs (iso-app #4)

OsteoBioR 23.01.1

New Features

  • option to use renewal rates uncertainties

OsteoBioR 22.11.1

Updates

  • added column names to exported interval data
  • shifted the UI to load/save a model from the right sidebar to the main panel above the tabs
  • the content of the input Individual varaible is now used to create default model names instead of “Current”
  • new model name and note in remote Test data containing only model inputs and data

Bug Fixes

  • fixed export of interval data (#12)
  • fixed reactive behavior after model upload in the tab Credibility intervals over time (#12)
  • fixed error when trying to export credibility interval plot
  • fix update of min/max time in the tabs Time point estimates and Estimates for user defined interval