Function reference • OsteoBioR

All functions

-package OsteoBioR-package OsteoBioR: The 'OsteoBioR' package.

TemporalIso-class TemporalIso: S4 class for temporal estimation of isotopic values

add_na_row(): Add NA Row

adjustTimeColumn(): Adjust Time Column

cleanAndSplitData(): Clean and Split Data

combineDataAndModelOutputs(): Combine Data and Model Outputs

computeResult(): Function to compute resulting isotopic values out of historic ones

config(): Config

defaultInputsForUI(): Default Inputs for UI

estimateIntervals(): Function to estimate temporal changes in isotopic values

estimateTimePoint(): Function to estimate isotopic value for specific time point(s)

export(<TemporalIso>): Export of TemporalIso samples as csv

extendXAxis(): Extend X Axis

extractIndividuals(): Extract Individuals

extractModelOutputs(): Extract Model Outputs

extractSavedModels(): Extract Saved Models

getBreaks(): Get Breaks

getEntry(): Get Entry

getExampleDataMatrix(): Get Example Matrix of Data

getExampleIsotopeVals(): Get Example Matrix of Isotopic Values

getLabel(): Get Label

getPlotData(): Get Plot Data

getSeed(): Get Seed

getShiftTime(): Calculate time points of shifted isotopic values

getSiteStayTimes(): Calculate estimated stay times for locations given isotopic values

getTimeMax(): Get Time Maximum

getTimeMin(): Get Time Minimum

getUserDefinedEst(): Calculate estimates for user defined intervals

getXAxisData(): Get X-Axis Data

joinTimeForDerivation(): Get Breaks for Derivation

logDebug(): LogDebug

logWarn(): LogWarn

logging(): Logging

messageNoModelsToPlot(): Message for no models to plot

modelSpecificationsServer(): server funtion of modelSpecifications module

modelSpecificationsUI(): ui function of modelSpecifications module

pasteLabelForDerivation(): Paste Label for Derivation Plot

plot(<TemporalIso>,<missing>): Plots for TemporalIso objects

plotTime(): Plot of credibility intervals for each time interval, plotted as timeseries

removeModelOutputs(): Remove Model Outputs

setVarsForUncMatrix(): Set Vars For Unc Matrix

shinyModule: Server and UI Functions for Shiny Module

startApplication(): Start Application

timePlotFormattingServer(): Server function of time plot formatting

timePlotFormattingUI(): UI function of time plot formatting

updateMatrixNamesInput(): Update only matrix row/colnames

updateTime(): Extract Plot Data