Applications

BMSCS - Bayesian Model Selection under Constraints

GitHub Repository Documentation Start App Start App (Beta)

BMSCS Image

BMSC is a Bayesian model selection algorithm used for causal analysis and other applications.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/bmscs:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/bmscs:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("BMSCS")

Start the app

Load and attach package

library("BMSCS")

Run the app

BMSCS::startApplication()

BNR

GitHub Repository Start App

BNR Image

This project leverages graphical models to perform queries with constrained bayesian estimation. This work is developed as a Shiny app in order to provide an easy and clean interaction.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/bnr:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/bnr:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Use Renv

Install R dependencies with renv

# install.packages("renv")
renv::restore()

Run the shinyapp

Run the application by executing:

shiny::runApp()

Bpred - Bayesian Prediction

GitHub Repository Documentation Start App Start App (Beta)

Bpred Image

Bayesian multivariate regression application.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/bpred:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/bpred:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("Bpred")

Start the app

Load and attach package

library("Bpred")

Run the app

Bpred::startApplication()

CausalR

GitHub Repository Video Tutorial Start App Start App (Beta)

CausalR Image

CausalR is an R-Shiny user-friendly interface for CausalImpact R package, which leverages the Bayesian modeling capabilities to estimate the causal effect of an intervention on a time series.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/causalr:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/causalr:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("CausalR")

Start the app

Load and attach package

library("CausalR")

Run the app

CausalR::startApplication()

ChangeR

GitHub Repository Documentation Start App Start App (Beta)

ChangeR Image

An App to display and identify isotopic change points in human tooth sections.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/changer:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/changer:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("ChangeR")

Start the app

Load and attach package

library("ChangeR")

Run the app

ChangeR::startApplication()

DSSM - Data Search and Spatiotemporal Modelling

GitHub Repository Documentation Video Tutorial Start App Start App (Beta)

DSSM Image

In addition to allowing users to query Pandora data includes different types of Bayesian and non-Bayesian spatiotemporal models.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/dssm:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/dssm:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("DSSM")

Start the app

Load and attach package

library("DSSM")

Run the app

DSSM::startApplication()

MapR

GitHub Repository Documentation Start App Start App (Beta)

MapR Image

MapR displays temporal and temperature graphical files for Isomemo.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/mapr:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/mapr:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("MapR")

Start the app

Load and attach package

library("MapR")

Run the app

MapR::startApplication()

OsteoBioR

GitHub Repository Documentation Start App Start App (Beta)

OsteoBioR Image

OsteoBioR is used to model sequential data where each measurement is known to cover a time interval (integration time). This can be used, among others, to model isotopic temporal trajectories from isotopic measurements taken in multiple living tissues.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/osteobior:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/osteobior:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Generate C++ Code

(Re-)generate R/rstanmodel.R and the C++ Source Code:

# install.packages("rstantools")
rstantools::rstan_config()

Install Package

Load and Install the R-Package

install.packages("OsteoBioR")

Start the app

Load and attach package

library("OsteoBioR")

Run the app

OsteoBioR::startApplication()

PlotR

GitHub Repository Documentation Start App Start App (Beta)

PlotR Image

PlotR produces Bayesian smoothed plots.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/plotr:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/plotr:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("PlotR")

Start the app

Load and attach package

library("PlotR")

Run the app

PlotR::startApplication()

ReSources - Food Reconstruction Using Isotopic Transferred Signals

GitHub Repository Documentation Video Tutorial Start App Start App (Beta)

ReSources Image

Bayesian mixing model.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/resources:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/resources:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("ReSources")

Start the app

Load and attach package

library("ReSources")

Run the app

ReSources::startApplication()

TraceR

GitHub Repository Documentation Start App Start App (Beta)

TraceR Image

TraceR helps to generate a visual representation of a relational map.

1. Install the software Docker

Download installation files from one of the links below and follow installation instructions:

After Docker is installed you can pull & run the app manually or use the all-in-one-app.sh-Script.

2. Download and install docker image of the app

This image contains all elements necessary for you to run the app from a web browser. Run this code in a local terminal

Open a terminal (command line):

  • Windows command line:
    1. Open the Start menu or press the Windows key + R;
    2. Type cmd or cmd.exe in the Run command box;
    3. Press Enter.
  • MacOS: open the Terminal app.
  • Linux: most Linux systems use the same default keyboard shortcut to start the command line: Ctrl-Alt-T or Super-T

Copy paste the text below into the terminal and press Enter:

docker pull ghcr.io/pandora-isomemo/tracer:main

3. Run the application in Docker

Steps 1 and 2 install the app. To run the app at any time after the installation open a terminal (as described in point 2) copy paste the text below into the terminal and press Enter. Wait for a notification that the app is in “listening” mode.

docker run -p 3838:3838 ghcr.io/pandora-isomemo/tracer:main

If the app is shutdown on Docker or if the terminal is closed the app will no longer work in your web browser (see point 4).

4. Display the app in a web browser

Once the app is running in Docker you need to display it in a web browser. For this, copy-paste the address below into your web browser’s address input and press Enter.

http://127.0.0.1:3838/

Troubleshooting

  1. You may not be able to install Docker due a lack of administrative rights. If so, contact your IT department to grant installation rights.
  2. While trying to use Docker on Windows you may receive the message that the “Windows Subsystem for Linux” is missing. To install it follow these instructions
  3. While trying to use Docker on Windows you may receive the error “Hardware assisted virtualization and data execution protection must be enabled in the BIOS”. This requires you to access your computer BIOS to enable “hardware virtualization”. Mode of access and BIOS menu options vary with computer model.
  4. In some problematic cases, you may consider using an older version of Docker. See: https://docs.docker.com/desktop/release-notes/

Install R

Add Repositories

Open a local R Console and add these two additional Repositories.

options(
  repos = c(
    getOption("repos"),
    PANDORA = "https://Pandora-IsoMemo.github.io/drat/"
    INWTlab = "https://inwtlab.github.io/drat/"
  )
)

Install Package

Load and Install the R-Package

install.packages("TraceR")

Start the app

Load and attach package

library("TraceR")

Run the app

TraceR::startApplication()