Package index
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addCentroids()
- Add centroid of clusters
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addFormattedAxis()
- Add Formatted Axis
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add_borders()
- Add borders layer (generic)
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add_center_line()
- Add center line (generic)
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add_coast()
- Add coastline layer (generic)
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add_grids()
- Add grid lines layer (generic)
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add_land()
- Add land layer (generic)
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add_ocean()
- Add ocean layer (generic)
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augmentData()
- Augment Data
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centerData()
- Center Data
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cleanup(<PlotSeriesExport>)
- Clean up the PlotSeriesExport object
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clusterMethodUI()
- Cluster Method UI
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config()
- Config
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convertLatLongWrapper()
- Convert Lat Long Wrapper
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createDuplicateModal()
- Creates a modalDialog for detectDuplicates module
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createPchPoints()
- Create PCH Points
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createPchPointsVec()
- Create PCH Points Vector
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customizeLeafletMap()
- Customize Leaflet Map
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datTable()
- Create data table
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dataExplorerServer()
- server funtion of data explorer module
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dataExplorerUI()
- ui function of dataExplorer module
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detectDuplicatesServer()
- detectDuplicates module server
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detectDuplicatesUI()
- detectDuplicates module ui
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downloadDSSMModelUI()
- Download DSSM Model UI
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draw()
- draw Interactive Map
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drawFittedBounds()
- Draw Fitted Bounds
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estimateMap()
- Estimates spatial average model with (optional) random effects (GAMM /Generalized Additive Mixed Model)
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estimateMap3D()
- Estimates spatio-temporal average model with (optional) random effects (GAMM /Generalized Additive Mixed Model)
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estimateMap3DKernel()
- Estimates spatio-temporal kernel density model
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estimateMapKernel()
- Estimates spatial kernel density model
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estimateMapSpread()
- Estimates spatial spread model (first or latest occurence of event)
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exportCSV()
- Export to csv
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exportFilename()
- Filename of Export
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exportJSON()
- Export to json
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exportMapR(<PlotSeriesExport>)
- Export the series of plots for MapR
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exportSeries(<PlotSeriesExport>)
- Export the series of plots to files or a GIF
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exportXLSX()
- Export to xlsx
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extractCenterEstimates()
- Extract Center Estimates
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extractChoicesFromIsomemoApi()
- Extract Choices From Isomemo Api
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extractMaskDraw()
- Extract Mask Draw
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extractXPredCenter()
- Extract XPred Center
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filled.contour2()
- Filled Countour 2 Wrapper for contour plot
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filterCoordCircle()
- Filter Coord Circle
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filterCoordRectangle()
- Filter Coord Rectangle
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filterCoordSquare()
- Filter Coord Square
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filterT()
- Filter Time
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findDuplicates()
- Finds duplicates in data using user specified similarity rules
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generate(<PlotSeriesExport>)
- Generate the series of plots and save them to files This function iterates over the specified time points, calls the plotting function for each time point, and saves the plots in the specified format.
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getAppTitle()
- Get App Title
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getCoordCenter()
- Get Coord Center
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getCostSpeed()
- Get Speed or Cost object for Cost-Surface and least-cost path
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getDefaultCoordColumn()
- Get Default Coord Column
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getFullCoordGrid()
- Get Full Coord Grid
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getHTMLFromPath()
- Get HTML from path
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getHrefTag()
- Get Href
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getPColor()
- Get Point Color
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getPointSize()
- Get Point Size
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getPointSymbols()
- Get Point Size
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interactiveMap()
- server funtion of interactive map module
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interactiveMapUI()
- ui function of interactiveMap module
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isOnlyDataSearchMode()
- Is Only Data SEARCH
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jitter_latlong()
- Jitter latitude and longitude coordinates
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joinCentroidData()
- Join centroid data to data
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leafletExport()
- server funtion of leaflet map export module
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leafletExportButton()
- ui function of leaflet map export module
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leafletPointSettingsServer()
- server funtion of leaflet point settings module
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leafletPointSettingsUI()
- ui function of leaflet point settings module
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leafletSettings()
- server funtion of leaflet settings module
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leafletSettingsUI()
- ui function of leaflet settings module
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length_of_degree()
- Length of a degree of latitude or longitude
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loadMaps()
- loadMaps
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locationFieldsServer()
- Location Fields Server
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locationFieldsUI()
- Location Fields UI
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makeClusterIdsContinuous()
- Make cluster ids continuous
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mapDiff()
- server function of model Results module
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mapSim()
- server function of model Results module
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modelLinkUI()
- ui function to display a download link
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modelResults2D()
- server function of model Results module
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modelResults2DKernel()
- server function of model Results module
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modelResults2DKernelUI()
- ui function of modelResults2DKernel module
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modelResults2DUI()
- ui function of modelResults2D module
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modelResults3D()
- server function of model Results module
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modelResults3DKernel()
- server function of model Results module
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modelResults3DKernelUI()
- ui function of modelResults3DKernel module
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modelResults3DUI()
- ui function of modelResults3D module
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modelResultsAssign()
- server function of model Results module
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modelResultsAssignUI()
- ui function of modelResultsAssignR module
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modelResultsDiffUI()
- ui function of modelResultsDiffSim module (OperateR)
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modelResultsSimUI()
- ui function of modelResultsDiffSim module (LocateR)
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modelResultsSpread()
- server function of model Results module
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modelResultsSpreadUI()
- ui function of modelResultsSpread module
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new_MapLayers()
- MapLayers S3 Class
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new_NorthArrow()
- North Arrow for Interactive Maps
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new_PlotSeriesExport()
- PlotSeriesExport Class
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new_ScaleBar()
- ScaleBar Class
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numericInputLatAndLongServer()
- Numeric Input Lat And Long Server
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numericInputLatAndLongUI()
- Numeric Input Lat And Long UI
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plot(<MapLayers>)
- Draw all map layers
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plotDS()
- Plots difference or similarity map
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plotMap()
- Plots map of a spatial average or spread model from estimateMap() or estimateMapSpread() functions
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plotMap3D()
- Plots time slice map of a spatio-temporal model from estimateMap3D() function
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plotTimeCourse()
- Plots time course map of a spatio-temporal model from estimateMap3D() function
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pointColourServer()
- server funtion of leaflet point settings module
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pointColourUI()
- ui function of leaflet point settings module
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pointSizeServer()
- server funtion of leaflet point settings module
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pointSizeUI()
- ui function of leaflet point settings module
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pointSymbolServer()
- server function of leaflet point symbol settings module
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pointSymbolUI()
- ui function of leaflet point symbol settings module
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prepareDate()
- Prepare Date
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print(<PlotSeriesExport>)
- Print method for PlotSeriesExport objects This method provides a summary of the PlotSeriesExport object.
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putNewLatLongToBegin()
- Put Lat Long To Begin
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reSourcesInstalled()
- Check Availability for ReSources package
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removeDataOutsideRestriction()
- Remove Data Outside Restriction
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removeOldIcons()
- Remove Old Icons
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savedMapsExportButton()
- Saved Maps Export Button
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savedMapsExportServer()
- Saved Maps Export Server
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savedMapsTab()
- server function of saved maps module
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savedMapsTabUI()
- ui function of saved maps module
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selectClusterGrouping()
- Select Cluster Grouping
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set(<NorthArrow>)
- Set North Arrow on a Leaflet Map
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set()
- Generic function for setting values in an object
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set(<ScaleBar>)
- Set Scale Bar on Leaflet Map
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setColorLegend()
- Set Colour Legend
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shiftDataToDefaultRestriction()
- Shift Data To Default Restriction
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setSkin()
getSkin()
allowedSkins()
- Skin helper functions
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sliderAndNumericInputServer()
- Slider And Input Server
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sliderAndNumericInputUI()
- Slider And Input UI
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smoothingServer()
- Smoothing Server
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smoothingUI()
- Smoothing UI
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startApplication()
- Start Application
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updateDataOnLeafletMap()
- Update Data On Map